Serveur d'exploration sur le peuplier

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

Draft Genome Sequences of Four Streptomyces Isolates from the Populus trichocarpa Root Endosphere and Rhizosphere.

Identifieur interne : 001E14 ( Main/Exploration ); précédent : 001E13; suivant : 001E15

Draft Genome Sequences of Four Streptomyces Isolates from the Populus trichocarpa Root Endosphere and Rhizosphere.

Auteurs : Dawn M. Klingeman [États-Unis] ; Sagar Utturkar [États-Unis] ; Tse-Yuan S. Lu [États-Unis] ; Christopher W. Schadt [États-Unis] ; Dale A. Pelletier [États-Unis] ; Steven D. Brown [Pays-Bas]

Source :

RBID : pubmed:26564053

Abstract

Draft genome sequences for four Actinobacteria from the genus Streptomyces are presented. Streptomyces is a metabolically diverse genus that is abundant in soils and has been reported in association with plants. The strains described in this study were isolated from the Populus trichocarpa endosphere and rhizosphere.

DOI: 10.1128/genomeA.01344-15
PubMed: 26564053
PubMed Central: PMC4972787


Affiliations:


Links toward previous steps (curation, corpus...)


Le document en format XML

<record>
<TEI>
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">Draft Genome Sequences of Four Streptomyces Isolates from the Populus trichocarpa Root Endosphere and Rhizosphere.</title>
<author>
<name sortKey="Klingeman, Dawn M" sort="Klingeman, Dawn M" uniqKey="Klingeman D" first="Dawn M" last="Klingeman">Dawn M. Klingeman</name>
<affiliation wicri:level="2">
<nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee</wicri:regionArea>
<placeName>
<region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Utturkar, Sagar" sort="Utturkar, Sagar" uniqKey="Utturkar S" first="Sagar" last="Utturkar">Sagar Utturkar</name>
<affiliation wicri:level="2">
<nlm:affiliation>Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, Tennessee, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, Tennessee</wicri:regionArea>
<placeName>
<region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Lu, Tse Yuan S" sort="Lu, Tse Yuan S" uniqKey="Lu T" first="Tse-Yuan S" last="Lu">Tse-Yuan S. Lu</name>
<affiliation wicri:level="2">
<nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee</wicri:regionArea>
<placeName>
<region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Schadt, Christopher W" sort="Schadt, Christopher W" uniqKey="Schadt C" first="Christopher W" last="Schadt">Christopher W. Schadt</name>
<affiliation wicri:level="2">
<nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, Tennessee, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, Tennessee</wicri:regionArea>
<placeName>
<region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Pelletier, Dale A" sort="Pelletier, Dale A" uniqKey="Pelletier D" first="Dale A" last="Pelletier">Dale A. Pelletier</name>
<affiliation wicri:level="2">
<nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, Tennessee, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, Tennessee</wicri:regionArea>
<placeName>
<region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Brown, Steven D" sort="Brown, Steven D" uniqKey="Brown S" first="Steven D" last="Brown">Steven D. Brown</name>
<affiliation wicri:level="1">
<nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, Tennessee, USA brownsd@ornl.gov.</nlm:affiliation>
<country wicri:rule="url">Pays-Bas</country>
<wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, Tennessee</wicri:regionArea>
<wicri:noRegion>Tennessee</wicri:noRegion>
</affiliation>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">PubMed</idno>
<date when="2015">2015</date>
<idno type="RBID">pubmed:26564053</idno>
<idno type="pmid">26564053</idno>
<idno type="doi">10.1128/genomeA.01344-15</idno>
<idno type="pmc">PMC4972787</idno>
<idno type="wicri:Area/Main/Corpus">001A33</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">001A33</idno>
<idno type="wicri:Area/Main/Curation">001A33</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">001A33</idno>
<idno type="wicri:Area/Main/Exploration">001A33</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en">Draft Genome Sequences of Four Streptomyces Isolates from the Populus trichocarpa Root Endosphere and Rhizosphere.</title>
<author>
<name sortKey="Klingeman, Dawn M" sort="Klingeman, Dawn M" uniqKey="Klingeman D" first="Dawn M" last="Klingeman">Dawn M. Klingeman</name>
<affiliation wicri:level="2">
<nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee</wicri:regionArea>
<placeName>
<region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Utturkar, Sagar" sort="Utturkar, Sagar" uniqKey="Utturkar S" first="Sagar" last="Utturkar">Sagar Utturkar</name>
<affiliation wicri:level="2">
<nlm:affiliation>Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, Tennessee, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, Tennessee</wicri:regionArea>
<placeName>
<region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Lu, Tse Yuan S" sort="Lu, Tse Yuan S" uniqKey="Lu T" first="Tse-Yuan S" last="Lu">Tse-Yuan S. Lu</name>
<affiliation wicri:level="2">
<nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee</wicri:regionArea>
<placeName>
<region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Schadt, Christopher W" sort="Schadt, Christopher W" uniqKey="Schadt C" first="Christopher W" last="Schadt">Christopher W. Schadt</name>
<affiliation wicri:level="2">
<nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, Tennessee, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, Tennessee</wicri:regionArea>
<placeName>
<region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Pelletier, Dale A" sort="Pelletier, Dale A" uniqKey="Pelletier D" first="Dale A" last="Pelletier">Dale A. Pelletier</name>
<affiliation wicri:level="2">
<nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, Tennessee, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, Tennessee</wicri:regionArea>
<placeName>
<region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Brown, Steven D" sort="Brown, Steven D" uniqKey="Brown S" first="Steven D" last="Brown">Steven D. Brown</name>
<affiliation wicri:level="1">
<nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, Tennessee, USA brownsd@ornl.gov.</nlm:affiliation>
<country wicri:rule="url">Pays-Bas</country>
<wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, Tennessee</wicri:regionArea>
<wicri:noRegion>Tennessee</wicri:noRegion>
</affiliation>
</author>
</analytic>
<series>
<title level="j">Genome announcements</title>
<idno type="ISSN">2169-8287</idno>
<imprint>
<date when="2015" type="published">2015</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass></textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">Draft genome sequences for four Actinobacteria from the genus Streptomyces are presented. Streptomyces is a metabolically diverse genus that is abundant in soils and has been reported in association with plants. The strains described in this study were isolated from the Populus trichocarpa endosphere and rhizosphere. </div>
</front>
</TEI>
<pubmed>
<MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM">
<PMID Version="1">26564053</PMID>
<DateCompleted>
<Year>2015</Year>
<Month>11</Month>
<Day>13</Day>
</DateCompleted>
<DateRevised>
<Year>2020</Year>
<Month>09</Month>
<Day>30</Day>
</DateRevised>
<Article PubModel="Electronic">
<Journal>
<ISSN IssnType="Print">2169-8287</ISSN>
<JournalIssue CitedMedium="Print">
<Volume>3</Volume>
<Issue>6</Issue>
<PubDate>
<Year>2015</Year>
<Month>Nov</Month>
<Day>12</Day>
</PubDate>
</JournalIssue>
<Title>Genome announcements</Title>
<ISOAbbreviation>Genome Announc</ISOAbbreviation>
</Journal>
<ArticleTitle>Draft Genome Sequences of Four Streptomyces Isolates from the Populus trichocarpa Root Endosphere and Rhizosphere.</ArticleTitle>
<ELocationID EIdType="doi" ValidYN="Y">10.1128/genomeA.01344-15</ELocationID>
<ELocationID EIdType="pii" ValidYN="Y">e01344-15</ELocationID>
<Abstract>
<AbstractText>Draft genome sequences for four Actinobacteria from the genus Streptomyces are presented. Streptomyces is a metabolically diverse genus that is abundant in soils and has been reported in association with plants. The strains described in this study were isolated from the Populus trichocarpa endosphere and rhizosphere. </AbstractText>
<CopyrightInformation>Copyright © 2015 Klingeman et al.</CopyrightInformation>
</Abstract>
<AuthorList CompleteYN="Y">
<Author ValidYN="Y">
<LastName>Klingeman</LastName>
<ForeName>Dawn M</ForeName>
<Initials>DM</Initials>
<AffiliationInfo>
<Affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Utturkar</LastName>
<ForeName>Sagar</ForeName>
<Initials>S</Initials>
<AffiliationInfo>
<Affiliation>Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, Tennessee, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Lu</LastName>
<ForeName>Tse-Yuan S</ForeName>
<Initials>TY</Initials>
<AffiliationInfo>
<Affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Schadt</LastName>
<ForeName>Christopher W</ForeName>
<Initials>CW</Initials>
<AffiliationInfo>
<Affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, Tennessee, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Pelletier</LastName>
<ForeName>Dale A</ForeName>
<Initials>DA</Initials>
<AffiliationInfo>
<Affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, Tennessee, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Brown</LastName>
<ForeName>Steven D</ForeName>
<Initials>SD</Initials>
<AffiliationInfo>
<Affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, Tennessee, USA brownsd@ornl.gov.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList>
<PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic">
<Year>2015</Year>
<Month>11</Month>
<Day>12</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo>
<Country>United States</Country>
<MedlineTA>Genome Announc</MedlineTA>
<NlmUniqueID>101595808</NlmUniqueID>
</MedlineJournalInfo>
</MedlineCitation>
<PubmedData>
<History>
<PubMedPubDate PubStatus="entrez">
<Year>2015</Year>
<Month>11</Month>
<Day>14</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed">
<Year>2015</Year>
<Month>11</Month>
<Day>14</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline">
<Year>2015</Year>
<Month>11</Month>
<Day>14</Day>
<Hour>6</Hour>
<Minute>1</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>epublish</PublicationStatus>
<ArticleIdList>
<ArticleId IdType="pubmed">26564053</ArticleId>
<ArticleId IdType="pii">3/6/e01344-15</ArticleId>
<ArticleId IdType="doi">10.1128/genomeA.01344-15</ArticleId>
<ArticleId IdType="pmc">PMC4972787</ArticleId>
</ArticleIdList>
<ReferenceList>
<Reference>
<Citation>Bioinformatics. 2014 Oct;30(19):2709-16</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24930142</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Annu Rev Genet. 2006;40:1-23</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16761950</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>BMC Bioinformatics. 2010 Mar 08;11:119</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20211023</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Antonie Van Leeuwenhoek. 2015 Aug;108(2):267-89</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26093915</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>FEMS Microbiol Rev. 2014 May;38(3):345-79</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24164321</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Bacteriol. 2012 Nov;194(21):5991-3</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23045501</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Philos Trans R Soc Lond B Biol Sci. 2013 Jan 06;368(1612):20120476</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23297358</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS One. 2013 Oct 16;8(10):e76382</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24146861</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Bacteriol. 2012 May;194(9):2383-4</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22493196</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Comput Biol. 2012 May;19(5):455-77</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22506599</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
</pubmed>
<affiliations>
<list>
<country>
<li>Pays-Bas</li>
<li>États-Unis</li>
</country>
<region>
<li>Tennessee</li>
</region>
</list>
<tree>
<country name="États-Unis">
<region name="Tennessee">
<name sortKey="Klingeman, Dawn M" sort="Klingeman, Dawn M" uniqKey="Klingeman D" first="Dawn M" last="Klingeman">Dawn M. Klingeman</name>
</region>
<name sortKey="Lu, Tse Yuan S" sort="Lu, Tse Yuan S" uniqKey="Lu T" first="Tse-Yuan S" last="Lu">Tse-Yuan S. Lu</name>
<name sortKey="Pelletier, Dale A" sort="Pelletier, Dale A" uniqKey="Pelletier D" first="Dale A" last="Pelletier">Dale A. Pelletier</name>
<name sortKey="Schadt, Christopher W" sort="Schadt, Christopher W" uniqKey="Schadt C" first="Christopher W" last="Schadt">Christopher W. Schadt</name>
<name sortKey="Utturkar, Sagar" sort="Utturkar, Sagar" uniqKey="Utturkar S" first="Sagar" last="Utturkar">Sagar Utturkar</name>
</country>
<country name="Pays-Bas">
<noRegion>
<name sortKey="Brown, Steven D" sort="Brown, Steven D" uniqKey="Brown S" first="Steven D" last="Brown">Steven D. Brown</name>
</noRegion>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PoplarV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001E14 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 001E14 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Bois
   |area=    PoplarV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     pubmed:26564053
   |texte=   Draft Genome Sequences of Four Streptomyces Isolates from the Populus trichocarpa Root Endosphere and Rhizosphere.
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i   -Sk "pubmed:26564053" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd   \
       | NlmPubMed2Wicri -a PoplarV1 

Wicri

This area was generated with Dilib version V0.6.37.
Data generation: Wed Nov 18 12:07:19 2020. Site generation: Wed Nov 18 12:16:31 2020